J5_5NCO_001

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAUC*GAGG

Length

24 nucleotides

Bulged bases

5NCO|1|A|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NCO|1|A|C|47
5NCO|1|A|G|48
5NCO|1|A|A|49
5NCO|1|A|U|50
5NCO|1|A|G|51
5NCO|1|A|A|52
5NCO|1|A|A|53
5NCO|1|A|G|54
*
5NCO|1|A|C|116
5NCO|1|A|G|117
5NCO|1|A|A|118
5NCO|1|A|A|119
5NCO|1|A|U|120
5NCO|1|A|G|121
*
5NCO|1|A|C|130
5NCO|1|A|A|131
*
5NCO|1|A|U|148
5NCO|1|A|A|149
5NCO|1|A|U|150
5NCO|1|A|C|151
*
5NCO|1|A|G|175
5NCO|1|A|A|176
5NCO|1|A|G|177
5NCO|1|A|G|178

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34