J5_5NCO_008

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC

Length

35 nucleotides

Bulged bases

5NCO|1|A|A|2062, 5NCO|1|A|A|2448, 5NCO|1|A|U|2449, 5NCO|1|A|U|2609

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NCO|1|A|G|2057
5NCO|1|A|A|2058
5NCO|1|A|A|2059
5NCO|1|A|A|2060
5NCO|1|A|G|2061
5NCO|1|A|A|2062
5NCO|1|A|C|2063
5NCO|1|A|C|2064
*
5NCO|1|A|G|2446
5NCO|1|A|G|2447
5NCO|1|A|A|2448
5NCO|1|A|U|2449
5NCO|1|A|A|2450
5NCO|1|A|A|2451
5NCO|1|A|C|2452
5NCO|1|A|A|2453
*
5NCO|1|A|U|2500
5NCO|1|A|C|2501
5NCO|1|A|G|2502
5NCO|1|A|A|2503
5NCO|1|A|U|2504
5NCO|1|A|G|2505
5NCO|1|A|U|2506
*
5NCO|1|A|G|2583
5NCO|1|A|U|2584
5NCO|1|A|U|2585
5NCO|1|A|U|2586
5NCO|1|A|A|2587
5NCO|1|A|G|2588
*
5NCO|1|A|C|2606
5NCO|1|A|G|2607
5NCO|1|A|G|2608
5NCO|1|A|U|2609
5NCO|1|A|C|2610
5NCO|1|A|C|2611

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

P-site tRNA-CCA end

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15

Chain N

50S ribosomal protein L16

Chain T

50S ribosomal protein L22

Chain b

50S ribosomal protein L32