J5_5ND8_006
3D structure
- PDB id
- 5ND8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGU*GUUCAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 5ND8|1|A|A|2089, 5ND8|1|A|A|2475, 5ND8|1|A|U|2612, 5ND8|1|A|U|2636
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5ND8|1|A|G|2084
5ND8|1|A|A|2085
5ND8|1|A|A|2086
5ND8|1|A|A|2087
5ND8|1|A|G|2088
5ND8|1|A|A|2089
5ND8|1|A|C|2090
5ND8|1|A|C|2091
*
5ND8|1|A|G|2473
5ND8|1|A|G|2474
5ND8|1|A|A|2475
5ND8|1|A|U|2476
5ND8|1|A|A|2477
5ND8|1|A|A|2478
5ND8|1|A|C|2479
5ND8|1|A|A|2480
*
5ND8|1|A|U|2527
5ND8|1|A|C|2528
5ND8|1|A|G|2529
5ND8|1|A|A|2530
5ND8|1|A|U|2531
5ND8|1|A|G|2532
5ND8|1|A|U|2533
*
5ND8|1|A|G|2610
5ND8|1|A|U|2611
5ND8|1|A|U|2612
5ND8|1|A|C|2613
5ND8|1|A|A|2614
5ND8|1|A|G|2615
*
5ND8|1|A|C|2633
5ND8|1|A|G|2634
5ND8|1|A|G|2635
5ND8|1|A|U|2636
5ND8|1|A|C|2637
5ND8|1|A|C|2638
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain D
- 50S ribosomal protein L2
- Chain E
- 50S ribosomal protein L3
- Chain F
- 50S ribosomal protein L4
- Chain P
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L22
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