J5_5ND9_002

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCAAAC*GGGUUGUA*UGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

5ND9|1|A|U|301, 5ND9|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND9|1|A|C|271
5ND9|1|A|C|272
5ND9|1|A|A|273
5ND9|1|A|A|274
5ND9|1|A|A|275
5ND9|1|A|C|276
*
5ND9|1|A|G|295
5ND9|1|A|G|296
5ND9|1|A|G|297
5ND9|1|A|U|298
5ND9|1|A|U|299
5ND9|1|A|G|300
5ND9|1|A|U|301
5ND9|1|A|A|302
*
5ND9|1|A|U|415
5ND9|1|A|G|416
5ND9|1|A|A|417
5ND9|1|A|G|418
5ND9|1|A|U|419
5ND9|1|A|A|420
5ND9|1|A|C|421
*
5ND9|1|A|G|445
5ND9|1|A|G|446
5ND9|1|A|A|447
5ND9|1|A|A|448
5ND9|1|A|U|449
5ND9|1|A|C|450
5ND9|1|A|U|451
5ND9|1|A|G|452
*
5ND9|1|A|U|467
5ND9|1|A|A|468
5ND9|1|A|A|469
5ND9|1|A|G|470

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L28