J5_5ND9_004
3D structure
- PDB id
- 5ND9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCGAGUU*AGAC*GUUCU*AGCGU*AGUGAGAAUGC
- Length
- 32 nucleotides
- Bulged bases
- 5ND9|1|A|G|1286, 5ND9|1|A|G|1288, 5ND9|1|A|U|1293
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5ND9|1|A|G|626
5ND9|1|A|C|627
5ND9|1|A|G|628
5ND9|1|A|A|629
5ND9|1|A|G|630
5ND9|1|A|U|631
5ND9|1|A|U|632
*
5ND9|1|A|A|713
5ND9|1|A|G|714
5ND9|1|A|A|715
5ND9|1|A|C|716
*
5ND9|1|A|G|854
5ND9|1|A|U|855
5ND9|1|A|U|856
5ND9|1|A|C|857
5ND9|1|A|U|858
*
5ND9|1|A|A|1233
5ND9|1|A|G|1234
5ND9|1|A|C|1235
5ND9|1|A|G|1236
5ND9|1|A|U|1237
*
5ND9|1|A|A|1285
5ND9|1|A|G|1286
5ND9|1|A|U|1287
5ND9|1|A|G|1288
5ND9|1|A|A|1289
5ND9|1|A|G|1290
5ND9|1|A|A|1291
5ND9|1|A|A|1292
5ND9|1|A|U|1293
5ND9|1|A|G|1294
5ND9|1|A|C|1295
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 7
- 50S ribosomal protein L35
- Chain F
- 50S ribosomal protein L4
- Chain O
- 50S ribosomal protein L15
- Chain T
- 50S ribosomal protein L20
- Chain U
- 50S ribosomal protein L21
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