J5_5ND9_005
3D structure
- PDB id
- 5ND9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCAAAAUGAC*GUG*CC*GUGAAUAGG*CAC
- Length
- 27 nucleotides
- Bulged bases
- 5ND9|1|A|G|1785, 5ND9|1|A|G|1790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5ND9|1|A|G|1718
5ND9|1|A|C|1719
5ND9|1|A|A|1720
5ND9|1|A|A|1721
5ND9|1|A|A|1722
5ND9|1|A|A|1723
5ND9|1|A|U|1724
5ND9|1|A|G|1725
5ND9|1|A|A|1726
5ND9|1|A|C|1727
*
5ND9|1|A|G|1749
5ND9|1|A|U|1750
5ND9|1|A|G|1751
*
5ND9|1|A|C|1778
5ND9|1|A|C|1779
*
5ND9|1|A|G|1783
5ND9|1|A|U|1784
5ND9|1|A|G|1785
5ND9|1|A|A|1786
5ND9|1|A|A|1787
5ND9|1|A|U|1788
5ND9|1|A|A|1789
5ND9|1|A|G|1790
5ND9|1|A|G|1791
*
5ND9|1|A|C|2015
5ND9|1|A|A|2016
5ND9|1|A|C|2017
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L14
- Chain S
- 50S ribosomal protein L19
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: