J5_5ND9_007
3D structure
- PDB id
- 5ND9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUGG*CGUG*CUGUUAU*AUCAGAAAG*CAAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5ND9_007 not in the Motif Atlas
- Homologous match to J5_5J7L_002
- Geometric discrepancy: 0.2183
- The information below is about J5_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_67416.1
- Basepair signature
- cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5ND9|1|a|C|37
5ND9|1|a|U|38
5ND9|1|a|G|39
5ND9|1|a|G|40
*
5ND9|1|a|C|411
5ND9|1|a|G|412
5ND9|1|a|U|413
5ND9|1|a|G|414
*
5ND9|1|a|C|444
5ND9|1|a|U|445
5ND9|1|a|G|446
5ND9|1|a|U|447
5ND9|1|a|U|448
5ND9|1|a|A|449
5ND9|1|a|U|450
*
5ND9|1|a|A|500
5ND9|1|a|U|501
5ND9|1|a|C|502
5ND9|1|a|A|503
5ND9|1|a|G|504
5ND9|1|a|A|505
5ND9|1|a|A|506
5ND9|1|a|A|507
5ND9|1|a|G|508
*
5ND9|1|a|C|553
5ND9|1|a|A|554
5ND9|1|a|A|555
5ND9|1|a|G|556
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
Coloring options: