J5_5NDJ_013
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG
- Length
- 33 nucleotides
- Bulged bases
- 5NDJ|1|1H|U|289, 5NDJ|1|1H|U|433
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NDJ|1|1H|C|258
5NDJ|1|1H|U|259
5NDJ|1|1H|A|260
5NDJ|1|1H|A|261
5NDJ|1|1H|A|262
5NDJ|1|1H|C|263
*
5NDJ|1|1H|G|283
5NDJ|1|1H|G|284
5NDJ|1|1H|G|285
5NDJ|1|1H|U|286
5NDJ|1|1H|C|287
5NDJ|1|1H|G|288
5NDJ|1|1H|U|289
5NDJ|1|1H|G|290
*
5NDJ|1|1H|C|397
5NDJ|1|1H|G|398
5NDJ|1|1H|A|399
5NDJ|1|1H|G|400
5NDJ|1|1H|U|401
5NDJ|1|1H|A|402
5NDJ|1|1H|C|403
*
5NDJ|1|1H|G|427
5NDJ|1|1H|G|428
5NDJ|1|1H|A|429
5NDJ|1|1H|A|430
5NDJ|1|1H|U|431
5NDJ|1|1H|C|432
5NDJ|1|1H|U|433
5NDJ|1|1H|G|434
*
5NDJ|1|1H|U|450
5NDJ|1|1H|A|451
5NDJ|1|1H|A|452
5NDJ|1|1H|G|453
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 61
- 50S ribosomal protein L9
- Chain J8
- 50S ribosomal protein L28
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