J5_5NDV_017

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

5NDV|1|6|A|541, 5NDV|1|6|C|543, 5NDV|1|6|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDV|1|6|C|31
5NDV|1|6|U|32
5NDV|1|6|U|33
5NDV|1|6|G|34
5NDV|1|6|U|35
*
5NDV|1|6|A|473
5NDV|1|6|A|474
5NDV|1|6|A|475
5NDV|1|6|U|476
5NDV|1|6|A|477
5NDV|1|6|A|478
5NDV|1|6|C|479
*
5NDV|1|6|G|509
5NDV|1|6|G|510
5NDV|1|6|A|511
5NDV|1|6|A|512
5NDV|1|6|U|513
5NDV|1|6|G|514
5NDV|1|6|A|515
5NDV|1|6|G|516
*
5NDV|1|6|C|536
5NDV|1|6|G|537
5NDV|1|6|A|538
5NDV|1|6|G|539
5NDV|1|6|G|540
5NDV|1|6|A|541
5NDV|1|6|A|542
5NDV|1|6|C|543
5NDV|1|6|A|544
5NDV|1|6|A|545
5NDV|1|6|U|546
*
5NDV|1|6|A|592
5NDV|1|6|U|593
5NDV|1|6|A|594
5NDV|1|6|G|595

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d3

40S ribosomal protein S23-A

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A