J5_5NG8_002

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGAGUU*AGAC*GUUC*GC*GAGAAUG

Length

23 nucleotides

Bulged bases

5NG8|1|AA|U|1293

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NG8|1|AA|C|627
5NG8|1|AA|G|628
5NG8|1|AA|A|629
5NG8|1|AA|G|630
5NG8|1|AA|U|631
5NG8|1|AA|U|632
*
5NG8|1|AA|A|713
5NG8|1|AA|G|714
5NG8|1|AA|A|715
5NG8|1|AA|C|716
*
5NG8|1|AA|G|854
5NG8|1|AA|U|855
5NG8|1|AA|U|856
5NG8|1|AA|C|857
*
5NG8|1|AA|G|1234
5NG8|1|AA|C|1235
*
5NG8|1|AA|G|1288
5NG8|1|AA|A|1289
5NG8|1|AA|G|1290
5NG8|1|AA|A|1291
5NG8|1|AA|A|1292
5NG8|1|AA|U|1293
5NG8|1|AA|G|1294

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L35

Chain AE

50S ribosomal protein L4

Chain AJ

50S ribosomal protein L15

Chain AO

50S ribosomal protein L20

Chain AP

50S ribosomal protein L21