J5_5NG8_004
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 5NG8|1|AA|A|2089, 5NG8|1|AA|A|2475, 5NG8|1|AA|U|2476, 5NG8|1|AA|G|2532, 5NG8|1|AA|U|2612, 5NG8|1|AA|U|2636
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NG8|1|AA|G|2084
5NG8|1|AA|A|2085
5NG8|1|AA|A|2086
5NG8|1|AA|A|2087
5NG8|1|AA|G|2088
5NG8|1|AA|A|2089
5NG8|1|AA|C|2090
5NG8|1|AA|C|2091
*
5NG8|1|AA|G|2473
5NG8|1|AA|G|2474
5NG8|1|AA|A|2475
5NG8|1|AA|U|2476
5NG8|1|AA|A|2477
5NG8|1|AA|A|2478
5NG8|1|AA|C|2479
5NG8|1|AA|A|2480
*
5NG8|1|AA|U|2527
5NG8|1|AA|C|2528
5NG8|1|AA|G|2529
5NG8|1|AA|A|2530
5NG8|1|AA|U|2531
5NG8|1|AA|G|2532
5NG8|1|AA|U|2533
5NG8|1|AA|C|2534
*
5NG8|1|AA|G|2609
5NG8|1|AA|G|2610
5NG8|1|AA|U|2611
5NG8|1|AA|U|2612
5NG8|1|AA|C|2613
5NG8|1|AA|A|2614
5NG8|1|AA|G|2615
*
5NG8|1|AA|C|2633
5NG8|1|AA|G|2634
5NG8|1|AA|G|2635
5NG8|1|AA|U|2636
5NG8|1|AA|C|2637
5NG8|1|AA|C|2638
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AC
- 50S ribosomal protein L2
- Chain AD
- 50S ribosomal protein L3
- Chain AE
- 50S ribosomal protein L4
- Chain AJ
- 50S ribosomal protein L15
- Chain AK
- 50S ribosomal protein L16
- Chain AU
- 50S ribosomal protein L27
- Chain AZ
- 50S ribosomal protein L32
Coloring options: