J5_5NG8_006

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUGGC*GCGUGAG*CUCUGUUA*UCAGAAAGCCAC*GUGGCAAG

Length

40 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NG8|1|Aa|C|37
5NG8|1|Aa|U|38
5NG8|1|Aa|G|39
5NG8|1|Aa|G|40
5NG8|1|Aa|C|41
*
5NG8|1|Aa|G|410
5NG8|1|Aa|C|411
5NG8|1|Aa|G|412
5NG8|1|Aa|U|413
5NG8|1|Aa|G|414
5NG8|1|Aa|A|415
5NG8|1|Aa|G|416
*
5NG8|1|Aa|C|442
5NG8|1|Aa|U|443
5NG8|1|Aa|C|444
5NG8|1|Aa|U|445
5NG8|1|Aa|G|446
5NG8|1|Aa|U|447
5NG8|1|Aa|U|448
5NG8|1|Aa|A|449
*
5NG8|1|Aa|U|501
5NG8|1|Aa|C|502
5NG8|1|Aa|A|503
5NG8|1|Aa|G|504
5NG8|1|Aa|A|505
5NG8|1|Aa|A|506
5NG8|1|Aa|A|507
5NG8|1|Aa|G|508
5NG8|1|Aa|C|509
5NG8|1|Aa|C|510
5NG8|1|Aa|A|511
5NG8|1|Aa|C|512
*
5NG8|1|Aa|G|549
5NG8|1|Aa|U|550
5NG8|1|Aa|G|551
5NG8|1|Aa|G|552
5NG8|1|Aa|C|553
5NG8|1|Aa|A|554
5NG8|1|Aa|A|555
5NG8|1|Aa|G|556

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ad

30S ribosomal protein S4

Chain Al

30S ribosomal protein S12