J5_5NG8_007

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

ACAUGCAAG*CGGACGGG*CAC*GAC*GGCAGCAGU

Length

32 nucleotides

Bulged bases

5NG8|1|Aa|A|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NG8|1|Aa|A|54
5NG8|1|Aa|C|55
5NG8|1|Aa|A|56
5NG8|1|Aa|U|57
5NG8|1|Aa|G|58
5NG8|1|Aa|C|59
5NG8|1|Aa|A|60
5NG8|1|Aa|A|61
5NG8|1|Aa|G|62
*
5NG8|1|Aa|C|105
5NG8|1|Aa|G|106
5NG8|1|Aa|G|107
5NG8|1|Aa|A|108
5NG8|1|Aa|C|109
5NG8|1|Aa|G|110
5NG8|1|Aa|G|111
5NG8|1|Aa|G|112
*
5NG8|1|Aa|C|322
5NG8|1|Aa|A|323
5NG8|1|Aa|C|324
*
5NG8|1|Aa|G|345
5NG8|1|Aa|A|346
5NG8|1|Aa|C|347
*
5NG8|1|Aa|G|358
5NG8|1|Aa|G|359
5NG8|1|Aa|C|360
5NG8|1|Aa|A|361
5NG8|1|Aa|G|362
5NG8|1|Aa|C|363
5NG8|1|Aa|A|364
5NG8|1|Aa|G|365
5NG8|1|Aa|U|366

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain AI

50S ribosomal protein L14

Chain AN

50S ribosomal protein L19

Chain Al

30S ribosomal protein S12

Chain Ap

30S ribosomal protein S16

Chain At

30S ribosomal protein S20