J5_5NG8_008

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

5NG8|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NG8|1|BA|C|47
5NG8|1|BA|G|48
5NG8|1|BA|A|49
5NG8|1|BA|U|50
5NG8|1|BA|G|51
5NG8|1|BA|A|52
5NG8|1|BA|A|53
5NG8|1|BA|G|54
*
5NG8|1|BA|C|115
5NG8|1|BA|G|116
5NG8|1|BA|A|117
5NG8|1|BA|A|118
5NG8|1|BA|U|119
5NG8|1|BA|G|120
*
5NG8|1|BA|C|129
5NG8|1|BA|A|130
*
5NG8|1|BA|U|149
5NG8|1|BA|A|150
5NG8|1|BA|U|151
*
5NG8|1|BA|A|178
5NG8|1|BA|A|179
5NG8|1|BA|G|180

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BR

50S ribosomal protein L23