J5_5NG8_014
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- ACAUGCAAG*CGGACGGG*CAC*GAC*GGCAGCAGU
- Length
- 32 nucleotides
- Bulged bases
- 5NG8|1|Ba|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NG8|1|Ba|A|54
5NG8|1|Ba|C|55
5NG8|1|Ba|A|56
5NG8|1|Ba|U|57
5NG8|1|Ba|G|58
5NG8|1|Ba|C|59
5NG8|1|Ba|A|60
5NG8|1|Ba|A|61
5NG8|1|Ba|G|62
*
5NG8|1|Ba|C|105
5NG8|1|Ba|G|106
5NG8|1|Ba|G|107
5NG8|1|Ba|A|108
5NG8|1|Ba|C|109
5NG8|1|Ba|G|110
5NG8|1|Ba|G|111
5NG8|1|Ba|G|112
*
5NG8|1|Ba|C|322
5NG8|1|Ba|A|323
5NG8|1|Ba|C|324
*
5NG8|1|Ba|G|345
5NG8|1|Ba|A|346
5NG8|1|Ba|C|347
*
5NG8|1|Ba|G|358
5NG8|1|Ba|G|359
5NG8|1|Ba|C|360
5NG8|1|Ba|A|361
5NG8|1|Ba|G|362
5NG8|1|Ba|C|363
5NG8|1|Ba|A|364
5NG8|1|Ba|G|365
5NG8|1|Ba|U|366
Current chains
- Chain Ba
- 16S ribosomal RNA
Nearby chains
- Chain BI
- 50S ribosomal protein L14
- Chain BN
- 50S ribosomal protein L19
- Chain Bl
- 30S ribosomal protein S12
- Chain Bp
- 30S ribosomal protein S16
- Chain Bt
- 30S ribosomal protein S20
Coloring options: