J5_5NO2_001

3D structure

PDB id

5NO2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5NO2_001 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.1269

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5NO2|1|A|C|36
5NO2|1|A|U|37
5NO2|1|A|G|38
5NO2|1|A|G|39
*
5NO2|1|A|C|403
5NO2|1|A|G|404
5NO2|1|A|U|405
5NO2|1|A|G|406
*
5NO2|1|A|C|436
5NO2|1|A|U|437
5NO2|1|A|U|438
5NO2|1|A|U|439
5NO2|1|A|C|440
*
5NO2|1|A|G|497
5NO2|1|A|A|498
5NO2|1|A|A|499
5NO2|1|A|G|500
*
5NO2|1|A|C|545
5NO2|1|A|A|546
5NO2|1|A|A|547
5NO2|1|A|G|548

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4