J5_5NWY_002

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5NWY_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0587

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5NWY|1|0|C|36
5NWY|1|0|U|37
5NWY|1|0|G|38
5NWY|1|0|G|39
*
5NWY|1|0|C|403
5NWY|1|0|G|404
5NWY|1|0|U|405
5NWY|1|0|G|406
*
5NWY|1|0|C|436
5NWY|1|0|U|437
5NWY|1|0|U|438
5NWY|1|0|U|439
5NWY|1|0|C|440
5NWY|1|0|A|441
5NWY|1|0|G|442
*
5NWY|1|0|C|492
5NWY|1|0|A|493
5NWY|1|0|G|494
5NWY|1|0|A|495
5NWY|1|0|A|496
5NWY|1|0|G|497
5NWY|1|0|A|498
5NWY|1|0|A|499
5NWY|1|0|G|500
*
5NWY|1|0|C|545
5NWY|1|0|A|546
5NWY|1|0|A|547
5NWY|1|0|G|548

Current chains

Chain 0

16S rRNA

Nearby chains

Chain 3

30S ribosomal protein S4

Chain B

30S ribosomal protein S12