J5_5NWY_004

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5NWY|1|N|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5NWY_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0491

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5NWY|1|N|C|47
5NWY|1|N|G|48
5NWY|1|N|A|49
5NWY|1|N|U|50
5NWY|1|N|G|51
5NWY|1|N|A|52
5NWY|1|N|A|53
5NWY|1|N|G|54
*
5NWY|1|N|C|116
5NWY|1|N|G|117
5NWY|1|N|A|118
5NWY|1|N|A|119
5NWY|1|N|U|120
5NWY|1|N|G|121
*
5NWY|1|N|C|130
5NWY|1|N|A|131
*
5NWY|1|N|U|148
5NWY|1|N|A|149
5NWY|1|N|U|150
*
5NWY|1|N|A|176
5NWY|1|N|G|177
5NWY|1|N|G|178

Current chains

Chain N

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L34