J5_5O2R_007
3D structure
- PDB id
- 5O2R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUGG*CGUG*CUUUC*GAAG*CAAG
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5O2R_007 not in the Motif Atlas
- Homologous match to J5_5J7L_001
- Geometric discrepancy: 0.1051
- The information below is about J5_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_92941.1
- Basepair signature
- cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5O2R|1|a|C|36
5O2R|1|a|U|37
5O2R|1|a|G|38
5O2R|1|a|G|39
*
5O2R|1|a|C|403
5O2R|1|a|G|404
5O2R|1|a|U|405
5O2R|1|a|G|406
*
5O2R|1|a|C|436
5O2R|1|a|U|437
5O2R|1|a|U|438
5O2R|1|a|U|439
5O2R|1|a|C|440
*
5O2R|1|a|G|497
5O2R|1|a|A|498
5O2R|1|a|A|499
5O2R|1|a|G|500
*
5O2R|1|a|C|545
5O2R|1|a|A|546
5O2R|1|a|A|547
5O2R|1|a|G|548
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
Coloring options: