J5_5O5J_001
3D structure
- PDB id
- 5O5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- CUGG*CGUG*CUUUC*GAAG*CGAG
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5O5J_001 not in the Motif Atlas
- Homologous match to J5_5J7L_001
- Geometric discrepancy: 0.1558
- The information below is about J5_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_92941.1
- Basepair signature
- cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5O5J|1|A|C|40
5O5J|1|A|U|41
5O5J|1|A|G|42
5O5J|1|A|G|43
*
5O5J|1|A|C|403
5O5J|1|A|G|404
5O5J|1|A|U|405
5O5J|1|A|G|406
*
5O5J|1|A|C|436
5O5J|1|A|U|437
5O5J|1|A|U|438
5O5J|1|A|U|439
5O5J|1|A|C|440
*
5O5J|1|A|G|477
5O5J|1|A|A|478
5O5J|1|A|A|479
5O5J|1|A|G|480
*
5O5J|1|A|C|525
5O5J|1|A|G|526
5O5J|1|A|A|527
5O5J|1|A|G|528
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
Coloring options: