J5_5OA3_003

3D structure

PDB id

5OA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 40S-eIF2D-re-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUCGCUCG*CGGG*UG*CCG*CGACC

Length

22 nucleotides

Bulged bases

5OA3|1|2|G|126, 5OA3|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OA3|1|2|G|123
5OA3|1|2|U|124
5OA3|1|2|C|125
5OA3|1|2|G|126
5OA3|1|2|C|127
5OA3|1|2|U|128
5OA3|1|2|C|129
5OA3|1|2|G|130
*
5OA3|1|2|C|182
5OA3|1|2|G|183
5OA3|1|2|G|184
5OA3|1|2|G|185
*
5OA3|1|2|U|214
5OA3|1|2|G|215
*
5OA3|1|2|C|310
5OA3|1|2|C|311
5OA3|1|2|G|312
*
5OA3|1|2|C|337
5OA3|1|2|G|338
5OA3|1|2|A|339
5OA3|1|2|C|340
5OA3|1|2|C|341

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8