J5_5OBM_016
3D structure
- PDB id
- 5OBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Gentamicin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CUUGU*AAAUAACG*UGGAAUGAG*CGAGGAACAAU*AUAG
- Length
- 37 nucleotides
- Bulged bases
- 5OBM|1|6|A|541, 5OBM|1|6|A|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5OBM|1|6|C|31
5OBM|1|6|U|32
5OBM|1|6|U|33
5OBM|1|6|G|34
5OBM|1|6|U|35
*
5OBM|1|6|A|473
5OBM|1|6|A|474
5OBM|1|6|A|475
5OBM|1|6|U|476
5OBM|1|6|A|477
5OBM|1|6|A|478
5OBM|1|6|C|479
5OBM|1|6|G|480
*
5OBM|1|6|U|508
5OBM|1|6|G|509
5OBM|1|6|G|510
5OBM|1|6|A|511
5OBM|1|6|A|512
5OBM|1|6|U|513
5OBM|1|6|G|514
5OBM|1|6|A|515
5OBM|1|6|G|516
*
5OBM|1|6|C|536
5OBM|1|6|G|537
5OBM|1|6|A|538
5OBM|1|6|G|539
5OBM|1|6|G|540
5OBM|1|6|A|541
5OBM|1|6|A|542
5OBM|1|6|C|543
5OBM|1|6|A|544
5OBM|1|6|A|545
5OBM|1|6|U|546
*
5OBM|1|6|A|592
5OBM|1|6|U|593
5OBM|1|6|A|594
5OBM|1|6|G|595
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain d3
- 40S ribosomal protein S23-A
- Chain e0
- 40S ribosomal protein S30-A
- Chain s9
- 40S ribosomal protein S9-A
Coloring options: