J5_5ON6_007

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

5ON6|1|6|A|541, 5ON6|1|6|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ON6|1|6|C|31
5ON6|1|6|U|32
5ON6|1|6|U|33
5ON6|1|6|G|34
5ON6|1|6|U|35
*
5ON6|1|6|A|473
5ON6|1|6|A|474
5ON6|1|6|A|475
5ON6|1|6|U|476
5ON6|1|6|A|477
5ON6|1|6|A|478
5ON6|1|6|C|479
*
5ON6|1|6|G|509
5ON6|1|6|G|510
5ON6|1|6|A|511
5ON6|1|6|A|512
5ON6|1|6|U|513
5ON6|1|6|G|514
5ON6|1|6|A|515
5ON6|1|6|G|516
*
5ON6|1|6|C|536
5ON6|1|6|G|537
5ON6|1|6|A|538
5ON6|1|6|G|539
5ON6|1|6|G|540
5ON6|1|6|A|541
5ON6|1|6|A|542
5ON6|1|6|C|543
5ON6|1|6|A|544
5ON6|1|6|A|545
5ON6|1|6|U|546
*
5ON6|1|6|A|592
5ON6|1|6|U|593
5ON6|1|6|A|594
5ON6|1|6|G|595

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d3

40S ribosomal protein S23-A

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A