J5_5ON6_012

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAAUC*GAUG*CGA*UGGUU

Length

45 nucleotides

Bulged bases

5ON6|1|A|U|128, 5ON6|1|A|U|132, 5ON6|1|A|A|140, 5ON6|1|A|U|141, 5ON6|1|A|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ON6|1|A|A|124
5ON6|1|A|U|125
5ON6|1|A|A|126
5ON6|1|A|G|127
5ON6|1|A|U|128
5ON6|1|A|U|129
5ON6|1|A|C|130
5ON6|1|A|C|131
5ON6|1|A|U|132
5ON6|1|A|U|133
5ON6|1|A|U|134
5ON6|1|A|A|135
5ON6|1|A|C|136
5ON6|1|A|U|137
5ON6|1|A|A|138
5ON6|1|A|C|139
5ON6|1|A|A|140
5ON6|1|A|U|141
5ON6|1|A|G|142
5ON6|1|A|G|143
*
5ON6|1|A|C|172
5ON6|1|A|A|173
5ON6|1|A|U|174
5ON6|1|A|G|175
5ON6|1|A|C|176
5ON6|1|A|U|177
5ON6|1|A|U|178
5ON6|1|A|A|179
5ON6|1|A|A|180
5ON6|1|A|A|181
5ON6|1|A|A|182
5ON6|1|A|U|183
5ON6|1|A|C|184
*
5ON6|1|A|G|201
5ON6|1|A|A|202
5ON6|1|A|U|203
5ON6|1|A|G|204
*
5ON6|1|A|C|263
5ON6|1|A|G|264
5ON6|1|A|A|265
*
5ON6|1|A|U|289
5ON6|1|A|G|290
5ON6|1|A|G|291
5ON6|1|A|U|292
5ON6|1|A|U|293

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain H

40S ribosomal protein S6-A

Chain J

40S ribosomal protein S8-A