J5_5ON6_014
3D structure
- PDB id
- 5ON6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of haemanthamine bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 35 nucleotides
- Bulged bases
- 5ON6|1|A|U|638, 5ON6|1|A|U|639, 5ON6|1|A|U|694, 5ON6|1|A|C|696, 5ON6|1|A|C|697, 5ON6|1|A|U|813, 5ON6|1|A|G|815, 5ON6|1|A|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5ON6|1|A|A|636
5ON6|1|A|C|637
5ON6|1|A|U|638
5ON6|1|A|U|639
5ON6|1|A|U|640
5ON6|1|A|G|641
*
5ON6|1|A|U|693
5ON6|1|A|U|694
5ON6|1|A|U|695
5ON6|1|A|C|696
5ON6|1|A|C|697
5ON6|1|A|U|698
*
5ON6|1|A|A|740
5ON6|1|A|C|741
5ON6|1|A|U|742
5ON6|1|A|U|743
5ON6|1|A|U|744
*
5ON6|1|A|A|807
5ON6|1|A|U|808
5ON6|1|A|A|809
5ON6|1|A|G|810
5ON6|1|A|A|811
5ON6|1|A|A|812
5ON6|1|A|U|813
5ON6|1|A|A|814
5ON6|1|A|G|815
5ON6|1|A|G|816
5ON6|1|A|A|817
*
5ON6|1|A|U|854
5ON6|1|A|A|855
5ON6|1|A|A|856
5ON6|1|A|U|857
5ON6|1|A|G|858
5ON6|1|A|A|859
5ON6|1|A|U|860
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S7-A
- Chain M
- 40S ribosomal protein S11-A
- Chain O
- 40S ribosomal protein S13
- Chain X
- 40S ribosomal protein S22-A
- Chain z
- 60S ribosomal protein L19-A
Coloring options: