J5_5ON6_016
3D structure
- PDB id
- 5ON6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of haemanthamine bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 5ON6|1|AR|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5ON6_016 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0362
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5ON6|1|AR|G|658
5ON6|1|AR|G|659
5ON6|1|AR|A|660
5ON6|1|AR|G|661
5ON6|1|AR|U|662
5ON6|1|AR|C|663
*
5ON6|1|AR|G|799
5ON6|1|AR|G|800
5ON6|1|AR|A|801
5ON6|1|AR|C|802
*
5ON6|1|AR|G|941
5ON6|1|AR|U|942
5ON6|1|AR|U|943
5ON6|1|AR|C|944
*
5ON6|1|AR|G|1375
5ON6|1|AR|C|1376
*
5ON6|1|AR|G|1431
5ON6|1|AR|C|1432
5ON6|1|AR|A|1433
5ON6|1|AR|G|1434
5ON6|1|AR|A|1435
5ON6|1|AR|U|1436
5ON6|1|AR|C|1437
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain AT
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CF
- 60S ribosomal protein L4-A
- Chain CN
- 60S ribosomal protein L13-A
- Chain CP
- 60S ribosomal protein L15-A
- Chain DC
- 60S ribosomal protein L28
- Chain DG
- 60S ribosomal protein L32
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