Loop J5_5OOL

3D structure

PDB id: 5OOL (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.06 Å

Loop

Sequence: AGAAGACC*GGAUAACA*UCGAUGUU*AGUUCAG*CGGUUU
Length: 37 nucleotides
Bulged bases: 5OOL|1|A|A|2725, 5OOL|1|A|A|2935, 5OOL|1|A|G|2992, 5OOL|1|A|U|2993, 5OOL|1|A|U|3072, 5OOL|1|A|U|3096, 5OOL|1|A|U|3097
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5OOL|1|A|A|2720
5OOL|1|A|G|2721
5OOL|1|A|A|2722
5OOL|1|A|A|2723
5OOL|1|A|G|2724
5OOL|1|A|A|2725
5OOL|1|A|C|2726
5OOL|1|A|C|2727
*
5OOL|1|A|G|2933
5OOL|1|A|G|2934
5OOL|1|A|A|2935
5OOL|1|A|U|2936
5OOL|1|A|A|2937
5OOL|1|A|A|2938
5OOL|1|A|C|2939
5OOL|1|A|A|2940
*
5OOL|1|A|U|2987
5OOL|1|A|C|2988
5OOL|1|A|G|2989
5OOL|1|A|A|2990
5OOL|1|A|U|2991
5OOL|1|A|G|2992
5OOL|1|A|U|2993
5OOL|1|A|U|2994
*
5OOL|1|A|A|3069
5OOL|1|A|G|3070
5OOL|1|A|U|3071
5OOL|1|A|U|3072
5OOL|1|A|C|3073
5OOL|1|A|A|3074
5OOL|1|A|G|3075
*
5OOL|1|A|C|3093
5OOL|1|A|G|3094
5OOL|1|A|G|3095
5OOL|1|A|U|3096
5OOL|1|A|U|3097
5OOL|1|A|U|3098

Current chains

Chain A: 16S ribosomal RNA

Nearby chains

Chain 0: 39S ribosomal protein L32, mitochondrial
Chain E: 39S ribosomal protein L3, mitochondrial
Chain F: 39S ribosomal protein L4, mitochondrial
Chain N: 39S ribosomal protein L16, mitochondrial
Chain T: 39S ribosomal protein L22, mitochondrial

J5_5OOL_003