J5_5OPT_001

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUUGU*AAAUAG*CAAUG*CAAU*AAAG

Length

24 nucleotides

Bulged bases

5OPT|1|E|A|598

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OPT|1|E|C|31
5OPT|1|E|U|32
5OPT|1|E|U|33
5OPT|1|E|G|34
5OPT|1|E|U|35
*
5OPT|1|E|A|525
5OPT|1|E|A|526
5OPT|1|E|A|527
5OPT|1|E|U|528
5OPT|1|E|A|529
5OPT|1|E|G|530
*
5OPT|1|E|C|560
5OPT|1|E|A|561
5OPT|1|E|A|562
5OPT|1|E|U|563
5OPT|1|E|G|564
*
5OPT|1|E|C|597
5OPT|1|E|A|598
5OPT|1|E|A|599
5OPT|1|E|U|600
*
5OPT|1|E|A|646
5OPT|1|E|A|647
5OPT|1|E|A|648
5OPT|1|E|G|649

Current chains

Chain E

18S rRNA

Nearby chains

Chain M

40S ribosomal protein S23, putative

Chain b

40S ribosomal protein S9, putative

Chain c

40S ribosomal protein S30