J5_5OQL_001
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGUGCUUGG*CCAGACCUACUUCAAAGCCACCG*CUCUUGG*CUG*UAAAGGAGC
- Length
- 51 nucleotides
- Bulged bases
- 5OQL|1|1|G|257, 5OQL|1|1|C|258, 5OQL|1|1|U|259, 5OQL|1|1|U|260, 5OQL|1|1|G|261, 5OQL|1|1|A|272, 5OQL|1|1|U|277, 5OQL|1|1|C|290, 5OQL|1|1|C|291, 5OQL|1|1|G|352, 5OQL|1|1|U|416
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5OQL|1|1|G|254
5OQL|1|1|G|255
5OQL|1|1|U|256
5OQL|1|1|G|257
5OQL|1|1|C|258
5OQL|1|1|U|259
5OQL|1|1|U|260
5OQL|1|1|G|261
5OQL|1|1|G|262
*
5OQL|1|1|C|270
5OQL|1|1|C|271
5OQL|1|1|A|272
5OQL|1|1|G|273
5OQL|1|1|A|274
5OQL|1|1|C|275
5OQL|1|1|C|276
5OQL|1|1|U|277
5OQL|1|1|A|278
5OQL|1|1|C|279
5OQL|1|1|U|280
5OQL|1|1|U|281
5OQL|1|1|C|282
5OQL|1|1|A|283
5OQL|1|1|A|284
5OQL|1|1|A|285
5OQL|1|1|G|286
5OQL|1|1|C|287
5OQL|1|1|C|288
5OQL|1|1|A|289
5OQL|1|1|C|290
5OQL|1|1|C|291
5OQL|1|1|G|292
*
5OQL|1|1|C|347
5OQL|1|1|U|348
5OQL|1|1|C|349
5OQL|1|1|U|350
5OQL|1|1|U|351
5OQL|1|1|G|352
5OQL|1|1|G|353
*
5OQL|1|1|C|415
5OQL|1|1|U|416
5OQL|1|1|G|417
*
5OQL|1|2|U|56
5OQL|1|2|A|57
5OQL|1|2|A|58
5OQL|1|2|A|59
5OQL|1|2|G|60
5OQL|1|2|G|61
5OQL|1|2|A|62
5OQL|1|2|G|63
5OQL|1|2|C|64
Current chains
- Chain 1
- 35S rRNA
- Chain 2
- U3 snoRNA
Nearby chains
- Chain A
- Periodic tryptophan protein 2-like protein
- Chain F
- Utp7
- Chain H
- U3 small nucleolar RNA-associated protein 11
- Chain K
- Utp14
- Chain N
- Utp18
- Chain O
- Putative U3 snoRNP protein
- Chain P
- Utp24
- Chain U
- Nop58
- Chain Z
- Bms1
- Chain a
- Imp3
- Chain b
- Putative U3 small nucleolar ribonucleoprotein
Coloring options: