J5_5OQL_002
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUUGU*AAAUAC*GAAUG*CAAU*AUAG
- Length
- 24 nucleotides
- Bulged bases
- 5OQL|1|1|U|1097, 5OQL|1|1|A|1128
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5OQL|1|1|C|618
5OQL|1|1|U|619
5OQL|1|1|U|620
5OQL|1|1|G|621
5OQL|1|1|U|622
*
5OQL|1|1|A|1057
5OQL|1|1|A|1058
5OQL|1|1|A|1059
5OQL|1|1|U|1060
5OQL|1|1|A|1061
5OQL|1|1|C|1062
*
5OQL|1|1|G|1094
5OQL|1|1|A|1095
5OQL|1|1|A|1096
5OQL|1|1|U|1097
5OQL|1|1|G|1098
*
5OQL|1|1|C|1127
5OQL|1|1|A|1128
5OQL|1|1|A|1129
5OQL|1|1|U|1130
*
5OQL|1|1|A|1176
5OQL|1|1|U|1177
5OQL|1|1|A|1178
5OQL|1|1|G|1179
Current chains
- Chain 1
- 35S rRNA
Nearby chains
- Chain C
- Utp3
- Chain Z
- Bms1
- Chain r
- 40S ribosomal protein s9-like protein
- Chain x
- 40S ribosomal protein s23-like protein
Coloring options: