J5_5T62_001
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 5T62|1|C|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5T62_001 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.0782
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T62|1|A|A|20
5T62|1|A|G|21
5T62|1|A|G|22
*
5T62|1|C|C|35
5T62|1|C|G|36
5T62|1|C|A|37
5T62|1|C|U|38
5T62|1|C|G|39
5T62|1|C|A|40
5T62|1|C|A|41
5T62|1|C|G|42
*
5T62|1|C|U|102
5T62|1|C|G|103
5T62|1|C|A|104
5T62|1|C|A|105
5T62|1|C|C|106
5T62|1|C|G|107
*
5T62|1|C|C|115
5T62|1|C|G|116
*
5T62|1|C|C|137
5T62|1|C|A|138
5T62|1|C|U|139
Current chains
- Chain A
- 25S Ribosomal RNA
- Chain C
- 5.8S Ribosomal RNA
Nearby chains
- Chain a
- 60S ribosomal protein L15-A
- Chain k
- 60S ribosomal protein L25
- Chain u
- 60S ribosomal protein L35-A
- Chain w
- 60S ribosomal protein L37-A
- Chain y
- 60S ribosomal protein L39
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