J5_5T62_002
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 5T62|1|A|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5T62_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0764
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5T62|1|A|G|658
5T62|1|A|G|659
5T62|1|A|A|660
5T62|1|A|G|661
5T62|1|A|U|662
5T62|1|A|C|663
*
5T62|1|A|G|799
5T62|1|A|G|800
5T62|1|A|A|801
5T62|1|A|C|802
*
5T62|1|A|G|941
5T62|1|A|U|942
5T62|1|A|U|943
5T62|1|A|C|944
*
5T62|1|A|G|1375
5T62|1|A|C|1376
*
5T62|1|A|G|1431
5T62|1|A|C|1432
5T62|1|A|A|1433
5T62|1|A|G|1434
5T62|1|A|A|1435
5T62|1|A|U|1436
5T62|1|A|C|1437
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- 60S ribosomal protein L4-A
- Chain N
- 60S ribosomal protein L13-A
- Chain a
- 60S ribosomal protein L15-A
- Chain n
- 60S ribosomal protein L28
- Chain r
- 60S ribosomal protein L32
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