Loop J5_5T62

3D structure

PDB id: 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

Loop

Sequence: AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
Length: 40 nucleotides
Bulged bases: 5T62|1|A|A|2404, 5T62|1|A|A|2817, 5T62|1|A|G|2874, 5T62|1|A|U|2978, 5T62|1|A|U|2979
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5T62|1|A|A|2399
5T62|1|A|G|2400
5T62|1|A|A|2401
5T62|1|A|A|2402
5T62|1|A|G|2403
5T62|1|A|A|2404
5T62|1|A|C|2405
5T62|1|A|C|2406
*
5T62|1|A|G|2815
5T62|1|A|G|2816
5T62|1|A|A|2817
5T62|1|A|U|2818
5T62|1|A|A|2819
5T62|1|A|A|2820
5T62|1|A|C|2821
5T62|1|A|U|2822
5T62|1|A|G|2823
*
5T62|1|A|C|2867
5T62|1|A|U|2868
5T62|1|A|U|2869
5T62|1|A|C|2870
5T62|1|A|G|2871
5T62|1|A|A|2872
5T62|1|A|U|2873
5T62|1|A|G|2874
5T62|1|A|U|2875
5T62|1|A|C|2876
*
5T62|1|A|G|2951
5T62|1|A|G|2952
5T62|1|A|U|2953
5T62|1|A|U|2954
5T62|1|A|U|2955
5T62|1|A|A|2956
5T62|1|A|G|2957
*
5T62|1|A|U|2975
5T62|1|A|A|2976
5T62|1|A|G|2977
5T62|1|A|U|2978
5T62|1|A|U|2979
5T62|1|A|U|2980

Current chains

Chain A: 25S Ribosomal RNA

Nearby chains

Chain D: 60S ribosomal protein L2-A
Chain E: 60S ribosomal protein L3
Chain F: 60S ribosomal protein L4-A
Chain V: 60S ribosomal export protein NMD3
Chain o: 60S ribosomal protein L29

J5_5T62_005