Loop J5_5T6R

3D structure

PDB id: 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
Description: Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å

Loop

Sequence: AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
Length: 40 nucleotides
Bulged bases: 5T6R|1|A|A|2404, 5T6R|1|A|A|2817, 5T6R|1|A|U|2873, 5T6R|1|A|G|2874, 5T6R|1|A|U|2978, 5T6R|1|A|U|2979
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5T6R|1|A|A|2399
5T6R|1|A|G|2400
5T6R|1|A|A|2401
5T6R|1|A|A|2402
5T6R|1|A|G|2403
5T6R|1|A|A|2404
5T6R|1|A|C|2405
5T6R|1|A|C|2406
*
5T6R|1|A|G|2815
5T6R|1|A|G|2816
5T6R|1|A|A|2817
5T6R|1|A|U|2818
5T6R|1|A|A|2819
5T6R|1|A|A|2820
5T6R|1|A|C|2821
5T6R|1|A|U|2822
5T6R|1|A|G|2823
*
5T6R|1|A|C|2867
5T6R|1|A|U|2868
5T6R|1|A|U|2869
5T6R|1|A|C|2870
5T6R|1|A|G|2871
5T6R|1|A|A|2872
5T6R|1|A|U|2873
5T6R|1|A|G|2874
5T6R|1|A|U|2875
5T6R|1|A|C|2876
*
5T6R|1|A|G|2951
5T6R|1|A|G|2952
5T6R|1|A|U|2953
5T6R|1|A|U|2954
5T6R|1|A|U|2955
5T6R|1|A|A|2956
5T6R|1|A|G|2957
*
5T6R|1|A|U|2975
5T6R|1|A|A|2976
5T6R|1|A|G|2977
5T6R|1|A|U|2978
5T6R|1|A|U|2979
5T6R|1|A|U|2980

Current chains

Chain A: 25S Ribosomal RNA

Nearby chains

Chain D: 60S ribosomal protein L2-A
Chain E: 60S ribosomal protein L3
Chain F: 60S ribosomal protein L4-A
Chain V: Maltose binding protein, 60S ribosomal export protein Nmd3 fusion
Chain o: 60S ribosomal protein L29

J5_5T6R_005