Loop J5_5T7V

3D structure

PDB id: 5T7V (explore in PDB, NAKB, or RNA 3D Hub)
Description: Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å

Loop

Sequence: CUGG*CGUGAGUGAUGAAG*CGUAAAACUCUGUUAUUA*UAAUCAGAAAG*CAAG
Length: 51 nucleotides
Bulged bases: 5T7V|1|A|U|420, 5T7V|1|A|G|421, 5T7V|1|A|U|501
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5T7V|1|A|C|37
5T7V|1|A|U|38
5T7V|1|A|G|39
5T7V|1|A|G|40
*
5T7V|1|A|C|411
5T7V|1|A|G|412
5T7V|1|A|U|413
5T7V|1|A|G|414
5T7V|1|A|A|415
5T7V|1|A|G|416
5T7V|1|A|U|417
5T7V|1|A|G|418
5T7V|1|A|A|419
5T7V|1|A|U|420
5T7V|1|A|G|421
5T7V|1|A|A|422
5T7V|1|A|A|423
5T7V|1|A|G|424
*
5T7V|1|A|C|435
5T7V|1|A|G|436
5T7V|1|A|U|437
5T7V|1|A|A|438
5T7V|1|A|A|439
5T7V|1|A|A|440
5T7V|1|A|A|441
5T7V|1|A|C|442
5T7V|1|A|U|443
5T7V|1|A|C|444
5T7V|1|A|U|445
5T7V|1|A|G|446
5T7V|1|A|U|447
5T7V|1|A|U|448
5T7V|1|A|A|449
5T7V|1|A|U|450
5T7V|1|A|U|451
5T7V|1|A|A|452
*
5T7V|1|A|U|498
5T7V|1|A|A|499
5T7V|1|A|A|500
5T7V|1|A|U|501
5T7V|1|A|C|502
5T7V|1|A|A|503
5T7V|1|A|G|504
5T7V|1|A|A|505
5T7V|1|A|A|506
5T7V|1|A|A|507
5T7V|1|A|G|508
*
5T7V|1|A|C|553
5T7V|1|A|A|554
5T7V|1|A|A|555
5T7V|1|A|G|556

Current chains

Chain A: 16S ribosomal RNA

Nearby chains

Chain S3: 30S ribosomal protein S12
Chain SC: 30S ribosomal protein S4

J5_5T7V_001