J5_5TBW_009

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

5TBW|1|A|U|128, 5TBW|1|A|U|132, 5TBW|1|A|U|133, 5TBW|1|A|C|136, 5TBW|1|A|U|137, 5TBW|1|A|A|140, 5TBW|1|A|U|141, 5TBW|1|A|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TBW|1|A|A|124
5TBW|1|A|U|125
5TBW|1|A|A|126
5TBW|1|A|G|127
5TBW|1|A|U|128
5TBW|1|A|U|129
5TBW|1|A|C|130
5TBW|1|A|C|131
5TBW|1|A|U|132
5TBW|1|A|U|133
5TBW|1|A|U|134
5TBW|1|A|A|135
5TBW|1|A|C|136
5TBW|1|A|U|137
5TBW|1|A|A|138
5TBW|1|A|C|139
5TBW|1|A|A|140
5TBW|1|A|U|141
5TBW|1|A|G|142
5TBW|1|A|G|143
*
5TBW|1|A|C|172
5TBW|1|A|A|173
5TBW|1|A|U|174
5TBW|1|A|G|175
5TBW|1|A|C|176
5TBW|1|A|U|177
5TBW|1|A|U|178
5TBW|1|A|A|179
5TBW|1|A|A|180
5TBW|1|A|A|181
5TBW|1|A|A|182
*
5TBW|1|A|U|203
5TBW|1|A|G|204
*
5TBW|1|A|C|263
5TBW|1|A|G|264
5TBW|1|A|A|265
*
5TBW|1|A|U|289
5TBW|1|A|G|290
5TBW|1|A|G|291
5TBW|1|A|U|292
5TBW|1|A|U|293

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain H

40S ribosomal protein S6-A

Chain J

40S ribosomal protein S8-A