J5_5TBW_018

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

5TBW|1|sR|A|541, 5TBW|1|sR|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TBW|1|sR|C|31
5TBW|1|sR|U|32
5TBW|1|sR|U|33
5TBW|1|sR|G|34
5TBW|1|sR|U|35
*
5TBW|1|sR|A|473
5TBW|1|sR|A|474
5TBW|1|sR|A|475
5TBW|1|sR|U|476
5TBW|1|sR|A|477
5TBW|1|sR|A|478
5TBW|1|sR|C|479
*
5TBW|1|sR|G|509
5TBW|1|sR|G|510
5TBW|1|sR|A|511
5TBW|1|sR|A|512
5TBW|1|sR|U|513
5TBW|1|sR|G|514
5TBW|1|sR|A|515
5TBW|1|sR|G|516
*
5TBW|1|sR|C|536
5TBW|1|sR|G|537
5TBW|1|sR|A|538
5TBW|1|sR|G|539
5TBW|1|sR|G|540
5TBW|1|sR|A|541
5TBW|1|sR|A|542
5TBW|1|sR|C|543
5TBW|1|sR|A|544
5TBW|1|sR|A|545
5TBW|1|sR|U|546
*
5TBW|1|sR|A|592
5TBW|1|sR|U|593
5TBW|1|sR|A|594
5TBW|1|sR|G|595

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain d3

40S ribosomal protein S23-A

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A