J5_5TBW_020

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

5TBW|1|sR|U|639, 5TBW|1|sR|U|694, 5TBW|1|sR|C|696, 5TBW|1|sR|U|742, 5TBW|1|sR|U|813, 5TBW|1|sR|G|815, 5TBW|1|sR|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TBW|1|sR|A|636
5TBW|1|sR|C|637
5TBW|1|sR|U|638
5TBW|1|sR|U|639
5TBW|1|sR|U|640
5TBW|1|sR|G|641
*
5TBW|1|sR|U|693
5TBW|1|sR|U|694
5TBW|1|sR|U|695
5TBW|1|sR|C|696
5TBW|1|sR|C|697
5TBW|1|sR|U|698
*
5TBW|1|sR|A|740
5TBW|1|sR|C|741
5TBW|1|sR|U|742
5TBW|1|sR|U|743
5TBW|1|sR|U|744
*
5TBW|1|sR|A|807
5TBW|1|sR|U|808
5TBW|1|sR|A|809
5TBW|1|sR|G|810
5TBW|1|sR|A|811
5TBW|1|sR|A|812
5TBW|1|sR|U|813
5TBW|1|sR|A|814
5TBW|1|sR|G|815
5TBW|1|sR|G|816
5TBW|1|sR|A|817
*
5TBW|1|sR|U|854
5TBW|1|sR|A|855
5TBW|1|sR|A|856
5TBW|1|sR|U|857
5TBW|1|sR|G|858
5TBW|1|sR|A|859
5TBW|1|sR|U|860

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L19-A

Chain c1

40S ribosomal protein S11-A

Chain c3

40S ribosomal protein S13

Chain d2

40S ribosomal protein S22-A

Chain s4

40S ribosomal protein S4-A

Chain s7

40S ribosomal protein S7-A