J5_5TGA_009

3D structure

PDB id

5TGA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

5TGA|1|2|U|128, 5TGA|1|2|U|132, 5TGA|1|2|U|133, 5TGA|1|2|C|136, 5TGA|1|2|U|137, 5TGA|1|2|A|140, 5TGA|1|2|U|141, 5TGA|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGA|1|2|A|124
5TGA|1|2|U|125
5TGA|1|2|A|126
5TGA|1|2|G|127
5TGA|1|2|U|128
5TGA|1|2|U|129
5TGA|1|2|C|130
5TGA|1|2|C|131
5TGA|1|2|U|132
5TGA|1|2|U|133
5TGA|1|2|U|134
5TGA|1|2|A|135
5TGA|1|2|C|136
5TGA|1|2|U|137
5TGA|1|2|A|138
5TGA|1|2|C|139
5TGA|1|2|A|140
5TGA|1|2|U|141
5TGA|1|2|G|142
5TGA|1|2|G|143
*
5TGA|1|2|C|172
5TGA|1|2|A|173
5TGA|1|2|U|174
5TGA|1|2|G|175
5TGA|1|2|C|176
5TGA|1|2|U|177
5TGA|1|2|U|178
5TGA|1|2|A|179
5TGA|1|2|A|180
5TGA|1|2|A|181
5TGA|1|2|A|182
*
5TGA|1|2|U|203
5TGA|1|2|G|204
*
5TGA|1|2|C|263
5TGA|1|2|G|264
5TGA|1|2|A|265
*
5TGA|1|2|U|289
5TGA|1|2|G|290
5TGA|1|2|G|291
5TGA|1|2|U|292
5TGA|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A