J5_5TGA_014
3D structure
- PDB id
- 5TGA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UCAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAGAGUCG*CUAAGUG*UAAA
- Length
- 49 nucleotides
- Bulged bases
- 5TGA|1|5|U|117, 5TGA|1|5|G|120, 5TGA|1|5|A|121, 5TGA|1|5|U|147, 5TGA|1|5|G|156, 5TGA|1|5|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5TGA|1|5|U|112
5TGA|1|5|C|113
5TGA|1|5|A|114
5TGA|1|5|A|115
5TGA|1|5|A|116
5TGA|1|5|U|117
5TGA|1|5|U|118
5TGA|1|5|U|119
5TGA|1|5|G|120
5TGA|1|5|A|121
5TGA|1|5|A|122
5TGA|1|5|A|123
5TGA|1|5|U|124
*
5TGA|1|5|A|144
5TGA|1|5|G|145
5TGA|1|5|U|146
5TGA|1|5|U|147
5TGA|1|5|G|148
5TGA|1|5|U|149
5TGA|1|5|A|150
5TGA|1|5|A|151
5TGA|1|5|U|152
5TGA|1|5|U|153
5TGA|1|5|U|154
5TGA|1|5|G|155
5TGA|1|5|G|156
5TGA|1|5|A|157
5TGA|1|5|G|158
*
5TGA|1|5|C|263
5TGA|1|5|G|264
5TGA|1|5|A|265
5TGA|1|5|A|266
5TGA|1|5|G|267
5TGA|1|5|A|268
5TGA|1|5|G|269
5TGA|1|5|U|270
5TGA|1|5|C|271
5TGA|1|5|G|272
*
5TGA|1|5|C|293
5TGA|1|5|U|294
5TGA|1|5|A|295
5TGA|1|5|A|296
5TGA|1|5|G|297
5TGA|1|5|U|298
5TGA|1|5|G|299
*
5TGA|1|5|U|316
5TGA|1|5|A|317
5TGA|1|5|A|318
5TGA|1|5|A|319
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain l8
- 60S ribosomal protein L8-A
- Chain m3
- 60S ribosomal protein L13-A
- Chain m5
- 60S ribosomal protein L15-A
- Chain o5
- 60S ribosomal protein L35-A
- Chain o6
- 60S ribosomal protein L36-A
Coloring options: