J5_5TGA_020

3D structure

PDB id

5TGA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

5TGA|1|6|A|541, 5TGA|1|6|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGA|1|6|C|31
5TGA|1|6|U|32
5TGA|1|6|U|33
5TGA|1|6|G|34
5TGA|1|6|U|35
*
5TGA|1|6|A|473
5TGA|1|6|A|474
5TGA|1|6|A|475
5TGA|1|6|U|476
5TGA|1|6|A|477
5TGA|1|6|A|478
5TGA|1|6|C|479
*
5TGA|1|6|G|509
5TGA|1|6|G|510
5TGA|1|6|A|511
5TGA|1|6|A|512
5TGA|1|6|U|513
5TGA|1|6|G|514
5TGA|1|6|A|515
5TGA|1|6|G|516
*
5TGA|1|6|C|536
5TGA|1|6|G|537
5TGA|1|6|A|538
5TGA|1|6|G|539
5TGA|1|6|G|540
5TGA|1|6|A|541
5TGA|1|6|A|542
5TGA|1|6|C|543
5TGA|1|6|A|544
5TGA|1|6|A|545
5TGA|1|6|U|546
*
5TGA|1|6|A|592
5TGA|1|6|U|593
5TGA|1|6|A|594
5TGA|1|6|G|595

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d3

40S ribosomal protein S23-A

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A