J5_5TGA_022

3D structure

PDB id

5TGA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

5TGA|1|6|U|639, 5TGA|1|6|U|694, 5TGA|1|6|C|696, 5TGA|1|6|U|742, 5TGA|1|6|U|813, 5TGA|1|6|G|815, 5TGA|1|6|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGA|1|6|A|636
5TGA|1|6|C|637
5TGA|1|6|U|638
5TGA|1|6|U|639
5TGA|1|6|U|640
5TGA|1|6|G|641
*
5TGA|1|6|U|693
5TGA|1|6|U|694
5TGA|1|6|U|695
5TGA|1|6|C|696
5TGA|1|6|C|697
5TGA|1|6|U|698
*
5TGA|1|6|A|740
5TGA|1|6|C|741
5TGA|1|6|U|742
5TGA|1|6|U|743
5TGA|1|6|U|744
*
5TGA|1|6|A|807
5TGA|1|6|U|808
5TGA|1|6|A|809
5TGA|1|6|G|810
5TGA|1|6|A|811
5TGA|1|6|A|812
5TGA|1|6|U|813
5TGA|1|6|A|814
5TGA|1|6|G|815
5TGA|1|6|G|816
5TGA|1|6|A|817
*
5TGA|1|6|U|854
5TGA|1|6|A|855
5TGA|1|6|A|856
5TGA|1|6|U|857
5TGA|1|6|G|858
5TGA|1|6|A|859
5TGA|1|6|U|860

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A

Chain c3

40S ribosomal protein S13

Chain d2

40S ribosomal protein S22-A

Chain m9

60S ribosomal protein L19-A

Chain s4

40S ribosomal protein S4-A

Chain s7

40S ribosomal protein S7-A