J5_5TGM_006
3D structure
- PDB id
- 5TGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 5TGM|1|1|G|2418, 5TGM|1|1|A|2799, 5TGM|1|1|G|2800, 5TGM|1|1|A|2801, 5TGM|1|1|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5TGM_006 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.0765
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08912.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5TGM|1|1|U|2416
5TGM|1|1|U|2417
5TGM|1|1|G|2418
5TGM|1|1|A|2419
*
5TGM|1|1|U|2611
5TGM|1|1|U|2612
5TGM|1|1|U|2613
5TGM|1|1|G|2614
*
5TGM|1|1|C|2627
5TGM|1|1|A|2628
*
5TGM|1|1|U|2650
5TGM|1|1|G|2651
*
5TGM|1|1|C|2798
5TGM|1|1|A|2799
5TGM|1|1|G|2800
5TGM|1|1|A|2801
5TGM|1|1|A|2802
5TGM|1|1|A|2803
5TGM|1|1|A|2804
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L2
- 60S ribosomal protein L2-A
- Chain M5
- 60S ribosomal protein L15-A
- Chain M8
- 60S ribosomal protein L18-A
- Chain N1
- 60S ribosomal protein L21-A
- Chain N8
- 60S ribosomal protein L28
- Chain N9
- 60S ribosomal protein L29
- Chain Q2
- 60S ribosomal protein L42-A
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