J5_5TGM_007

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAGC

Length

37 nucleotides

Bulged bases

5TGM|1|2|A|541, 5TGM|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGM|1|2|G|30
5TGM|1|2|C|31
5TGM|1|2|U|32
5TGM|1|2|U|33
5TGM|1|2|G|34
5TGM|1|2|U|35
*
5TGM|1|2|A|473
5TGM|1|2|A|474
5TGM|1|2|A|475
5TGM|1|2|U|476
5TGM|1|2|A|477
5TGM|1|2|A|478
5TGM|1|2|C|479
*
5TGM|1|2|G|509
5TGM|1|2|G|510
5TGM|1|2|A|511
5TGM|1|2|A|512
5TGM|1|2|U|513
5TGM|1|2|G|514
5TGM|1|2|A|515
5TGM|1|2|G|516
*
5TGM|1|2|C|536
5TGM|1|2|G|537
5TGM|1|2|A|538
5TGM|1|2|G|539
5TGM|1|2|G|540
5TGM|1|2|A|541
5TGM|1|2|A|542
5TGM|1|2|C|543
5TGM|1|2|A|544
5TGM|1|2|A|545
5TGM|1|2|U|546
*
5TGM|1|2|A|592
5TGM|1|2|U|593
5TGM|1|2|A|594
5TGM|1|2|G|595
5TGM|1|2|C|596

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain E0

40S ribosomal protein S30-A

Chain S9

40S ribosomal protein S9-A