J5_5TGM_010

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

5TGM|1|2|U|128, 5TGM|1|2|U|132, 5TGM|1|2|A|140, 5TGM|1|2|U|141, 5TGM|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGM|1|2|A|124
5TGM|1|2|U|125
5TGM|1|2|A|126
5TGM|1|2|G|127
5TGM|1|2|U|128
5TGM|1|2|U|129
5TGM|1|2|C|130
5TGM|1|2|C|131
5TGM|1|2|U|132
5TGM|1|2|U|133
5TGM|1|2|U|134
5TGM|1|2|A|135
5TGM|1|2|C|136
5TGM|1|2|U|137
5TGM|1|2|A|138
5TGM|1|2|C|139
5TGM|1|2|A|140
5TGM|1|2|U|141
5TGM|1|2|G|142
5TGM|1|2|G|143
*
5TGM|1|2|C|172
5TGM|1|2|A|173
5TGM|1|2|U|174
5TGM|1|2|G|175
5TGM|1|2|C|176
5TGM|1|2|U|177
5TGM|1|2|U|178
5TGM|1|2|A|179
5TGM|1|2|A|180
5TGM|1|2|A|181
5TGM|1|2|A|182
*
5TGM|1|2|U|203
5TGM|1|2|G|204
*
5TGM|1|2|C|263
5TGM|1|2|G|264
5TGM|1|2|A|265
5TGM|1|2|A|266
5TGM|1|2|U|267
*
5TGM|1|2|A|288
5TGM|1|2|U|289
5TGM|1|2|G|290
5TGM|1|2|G|291
5TGM|1|2|U|292
5TGM|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8