J5_5TGM_011
3D structure
- PDB id
- 5TGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 37 nucleotides
- Bulged bases
- 5TGM|1|2|U|638, 5TGM|1|2|C|679, 5TGM|1|2|C|680, 5TGM|1|2|U|796, 5TGM|1|2|G|798, 5TGM|1|2|A|839
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5TGM|1|2|A|636
5TGM|1|2|C|637
5TGM|1|2|U|638
5TGM|1|2|U|639
5TGM|1|2|U|640
5TGM|1|2|G|641
*
5TGM|1|2|U|676
5TGM|1|2|U|677
5TGM|1|2|U|678
5TGM|1|2|C|679
5TGM|1|2|C|680
5TGM|1|2|U|681
5TGM|1|2|U|682
*
5TGM|1|2|G|722
5TGM|1|2|A|723
5TGM|1|2|C|724
5TGM|1|2|U|725
5TGM|1|2|U|726
5TGM|1|2|U|727
*
5TGM|1|2|A|790
5TGM|1|2|U|791
5TGM|1|2|A|792
5TGM|1|2|G|793
5TGM|1|2|A|794
5TGM|1|2|A|795
5TGM|1|2|U|796
5TGM|1|2|A|797
5TGM|1|2|G|798
5TGM|1|2|G|799
5TGM|1|2|A|800
*
5TGM|1|2|U|837
5TGM|1|2|A|838
5TGM|1|2|A|839
5TGM|1|2|U|840
5TGM|1|2|G|841
5TGM|1|2|A|842
5TGM|1|2|U|843
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C1
- 40S ribosomal protein S11-A,40S Ribosomal Protein S11
- Chain C3
- 40S ribosomal protein S13
- Chain D2
- 40S ribosomal protein S22-A
- Chain M9
- 60S ribosomal protein L19-A
- Chain S4
- 40S ribosomal protein S4-A
- Chain S7
- 40S ribosomal protein S7-A
Coloring options: