J5_5TGM_016
3D structure
- PDB id
- 5TGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- AGAAGACCC*GGGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 42 nucleotides
- Bulged bases
- 5TGM|1|5|A|2401, 5TGM|1|5|A|2404, 5TGM|1|5|A|2817, 5TGM|1|5|U|2873, 5TGM|1|5|U|2875, 5TGM|1|5|U|2978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5TGM|1|5|A|2399
5TGM|1|5|G|2400
5TGM|1|5|A|2401
5TGM|1|5|A|2402
5TGM|1|5|G|2403
5TGM|1|5|A|2404
5TGM|1|5|C|2405
5TGM|1|5|C|2406
5TGM|1|5|C|2407
*
5TGM|1|5|G|2814
5TGM|1|5|G|2815
5TGM|1|5|G|2816
5TGM|1|5|A|2817
5TGM|1|5|U|2818
5TGM|1|5|A|2819
5TGM|1|5|A|2820
5TGM|1|5|C|2821
5TGM|1|5|U|2822
5TGM|1|5|G|2823
*
5TGM|1|5|C|2867
5TGM|1|5|U|2868
5TGM|1|5|U|2869
5TGM|1|5|C|2870
5TGM|1|5|G|2871
5TGM|1|5|A|2872
5TGM|1|5|U|2873
5TGM|1|5|G|2874
5TGM|1|5|U|2875
5TGM|1|5|C|2876
*
5TGM|1|5|G|2951
5TGM|1|5|G|2952
5TGM|1|5|U|2953
5TGM|1|5|U|2954
5TGM|1|5|U|2955
5TGM|1|5|A|2956
5TGM|1|5|G|2957
*
5TGM|1|5|U|2975
5TGM|1|5|A|2976
5TGM|1|5|G|2977
5TGM|1|5|U|2978
5TGM|1|5|U|2979
5TGM|1|5|U|2980
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l2
- 60S ribosomal protein L2-A
- Chain l3
- 60S ribosomal protein L3
- Chain l4
- 60S ribosomal protein L4-A
- Chain n8
- 60S ribosomal protein L28
- Chain n9
- 60S ribosomal protein L29
- Chain p
- Peptidyl-tRNA analog ACCA-Leu-Phe
Coloring options: