J5_5TGM_024

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

5TGM|1|6|U|639, 5TGM|1|6|U|694, 5TGM|1|6|C|696, 5TGM|1|6|U|742, 5TGM|1|6|U|813, 5TGM|1|6|G|815, 5TGM|1|6|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGM|1|6|A|636
5TGM|1|6|C|637
5TGM|1|6|U|638
5TGM|1|6|U|639
5TGM|1|6|U|640
5TGM|1|6|G|641
*
5TGM|1|6|U|693
5TGM|1|6|U|694
5TGM|1|6|U|695
5TGM|1|6|C|696
5TGM|1|6|C|697
5TGM|1|6|U|698
*
5TGM|1|6|A|740
5TGM|1|6|C|741
5TGM|1|6|U|742
5TGM|1|6|U|743
5TGM|1|6|U|744
*
5TGM|1|6|A|807
5TGM|1|6|U|808
5TGM|1|6|A|809
5TGM|1|6|G|810
5TGM|1|6|A|811
5TGM|1|6|A|812
5TGM|1|6|U|813
5TGM|1|6|A|814
5TGM|1|6|G|815
5TGM|1|6|G|816
5TGM|1|6|A|817
*
5TGM|1|6|U|854
5TGM|1|6|A|855
5TGM|1|6|A|856
5TGM|1|6|U|857
5TGM|1|6|G|858
5TGM|1|6|A|859
5TGM|1|6|U|860

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A,40S Ribosomal Protein S11

Chain c3

40S ribosomal protein S13

Chain d2

40S ribosomal protein S22-A

Chain m9

60S ribosomal protein L19-A

Chain s4

40S ribosomal protein S4-A

Chain s7

40S ribosomal protein S7-A