J5_5U9F_001

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5U9F|1|01|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5U9F_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0979

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5U9F|1|01|C|47
5U9F|1|01|G|48
5U9F|1|01|A|49
5U9F|1|01|U|50
5U9F|1|01|G|51
5U9F|1|01|A|52
5U9F|1|01|A|53
5U9F|1|01|G|54
*
5U9F|1|01|C|116
5U9F|1|01|G|117
5U9F|1|01|A|118
5U9F|1|01|A|119
5U9F|1|01|U|120
5U9F|1|01|G|121
*
5U9F|1|01|C|130
5U9F|1|01|A|131
*
5U9F|1|01|U|148
5U9F|1|01|A|149
5U9F|1|01|U|150
*
5U9F|1|01|A|176
5U9F|1|01|G|177
5U9F|1|01|G|178

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 32

50S ribosomal protein L34