3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUGG*CGUG*CUUUC*GAAG*CAAG
Length
21 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_5U9F_007 not in the Motif Atlas
Homologous match to J5_5J7L_001
Geometric discrepancy: 0.1297
The information below is about J5_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_92941.1
Basepair signature
cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

5U9F|1|A|C|36
5U9F|1|A|U|37
5U9F|1|A|G|38
5U9F|1|A|G|39
*
5U9F|1|A|C|403
5U9F|1|A|G|404
5U9F|1|A|U|405
5U9F|1|A|G|406
*
5U9F|1|A|C|436
5U9F|1|A|U|437
5U9F|1|A|U|438
5U9F|1|A|U|439
5U9F|1|A|C|440
*
5U9F|1|A|G|497
5U9F|1|A|A|498
5U9F|1|A|A|499
5U9F|1|A|G|500
*
5U9F|1|A|C|545
5U9F|1|A|A|546
5U9F|1|A|A|547
5U9F|1|A|G|548

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain D
30S ribosomal protein S4
Chain L
30S ribosomal protein S12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3903 s